STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04473Related to ubiquitin-like protein Hub1. (75 aa)    
Predicted Functional Partners:
PIIN_00949
Uncharacterized protein.
    
 0.991
PIIN_01618
Probable splicing factor PRP8 (U5 snRNP).
    
 
 0.980
PIIN_03064
Related to microfibril-associated protein.
    
 0.975
PIIN_07270
Uncharacterized protein.
    
 0.973
PIIN_01388
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
   
  0.914
PIIN_02185
U1-type domain-containing protein.
    
 0.908
PIIN_01875
Uncharacterized protein.
    
  0.906
PIIN_01813
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
    
 0.895
PIIN_03724
Related to Pre-mRNA-splicing factor RBM22.
   
  0.891
PIIN_07942
Related to RNA-binding proteins.
   
   0.889
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.