STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04680Related to UBP12-ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family. (1142 aa)    
Predicted Functional Partners:
PIIN_05941
Related to MRPS9-mitochondrial ribosomal protein, small subunit; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.902
PIIN_05350
Related to MRPL9-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.893
PIIN_11735
Related to MRP2-mitochondrial ribosomal protein, small subunit.
    
 
 0.889
PIIN_03638
Probable 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.886
PIIN_05921
Related to 30S ribosomal protein S16.
   
 
 0.886
PIIN_02427
Related to 50S ribosomal protein L4.
   
 
 0.884
PIIN_02720
Probable ribosomal protein L26.
    
 
 0.880
PIIN_07475
Related to MRPL6-mitochondrial ribosomal protein, large subunit.
   
 
 0.871
PIIN_01134
Related to MRPS5-mitochondrial ribosomal protein, small subunit; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.870
PIIN_03417
Related to MRP4-Mitochondrial ribosomal protein, small subunit.
    
 
 0.858
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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