STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04709Related to RAD2-structure-specific nuclease of the nucleotide excision repairosome. (1153 aa)    
Predicted Functional Partners:
PIIN_03556
3'-5' exonuclease domain-containing protein.
   
 0.996
PIIN_06810
Uncharacterized protein.
   
 0.996
PIIN_02200
Related to TFB1-subunit of RNA polymerase II transcription initiation factor TFIIH.
    
 0.987
PIIN_03154
Probable SSL2-DNA helicase.
    
 0.984
PIIN_11763
Probable RAD3-DNA helicase/ATPase.
   
 0.979
PIIN_06335
Uncharacterized protein.
   
 0.966
PIIN_03826
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.943
PIIN_01285
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.933
PIIN_04103
Related to probable RNA helicase MPH1.
   
 0.929
PIIN_06794
Related to RAD1-component of the nucleotide excision repairosome.
   
 0.921
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.