STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04753Related to SEN1 protein. (1917 aa)    
Predicted Functional Partners:
PIIN_04669
CID domain-containing protein.
   
 
 0.969
PIIN_01555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.899
PIIN_07156
Related to SPT5-transcription elongation protein.
    
 
 0.732
PIIN_07709
Sister chromatid cohesion protein.
   
    0.709
PIIN_03425
Nuclear cap-binding protein subunit 2.
    
 
 0.689
PIIN_08500
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.630
PIIN_00021
Related to NMD2-Nonsense-mediated mRNA decay protein 2.
   
 0.582
PIIN_00022
Upf2 domain-containing protein.
   
 0.582
PIIN_07699
Related to regulator of nonsense transcripts 1.
  
 
0.548
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
    
 
 0.544
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.