STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04875Related to Exosome complex exonuclease RRP43. (279 aa)    
Predicted Functional Partners:
PIIN_00342
Probable exosome complex exonuclease rrp41.
   
 0.999
PIIN_01674
Related to CSL4-exosome core component.
   
 0.999
PIIN_01711
Related to RRP4-3`-5` exoribonuclease.
   
 0.999
PIIN_02785
RNase_PH domain-containing protein.
   
0.999
PIIN_03698
Probable RRP45-Exosome complex exonuclease.
  
0.999
PIIN_07486
RNase_PH domain-containing protein.
   
 0.999
PIIN_09533
Related to RRP40-protein involved in ribosomal RNA processing, component of the exosome complex.
   
 0.999
PIIN_07036
RNase_PH domain-containing protein.
  
 0.998
PIIN_06814
Probable DIS3 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA; Belongs to the RNR ribonuclease family.
   
 0.997
PIIN_02603
Uncharacterized protein.
   
 0.996
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.