STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05002Uncharacterized protein. (626 aa)    
Predicted Functional Partners:
PIIN_03835
Probable PRP43-involved in spliceosome disassembly.
 
 
 0.999
PIIN_00094
Uncharacterized protein.
   
 0.998
PIIN_00725
Related to U2 snRNP protein A.
   
 0.993
PIIN_03043
Tudor domain-containing protein.
   
 
  0.978
PIIN_04544
Related to RNA helicase.
   
 
 0.978
PIIN_08404
Probable pre-mRNA splicing factor.
   
 
 0.976
PIIN_05306
Probable splicing factor 3b subunit 1.
   
 0.950
PIIN_02395
Related to PRP11-pre-mRNA splicing factor.
    
 0.919
PIIN_09708
Related to RNA splicing factor PRP9.
   
 0.908
PIIN_00792
SAE2 domain-containing protein.
   
 
 0.873
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.