STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05092Related to tRNA pseudouridine synthase B. (389 aa)    
Predicted Functional Partners:
PIIN_08877
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.992
PIIN_08069
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.985
PIIN_00222
Probable NOP10-nucleolar rRNA processing protein.
   
 0.981
PIIN_01336
Probable NOP1-fibrillarin.
   
 
 0.975
PIIN_08145
Probable SIK1-involved in pre-rRNA processing.
   
 
 0.974
PIIN_05181
Probable NOP58-required for pre-18S rRNA processing.
  
 
 0.966
PIIN_02255
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.963
PIIN_02274
Related to IFM1-Translation initiation factor 2, mitochondrial.
  
 
 0.943
PIIN_05498
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
  
 0.912
PIIN_06663
Probable RPL8B-60s large subunit ribosomal protein L7a.e.B.
  
 0.912
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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