STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05107RING-type domain-containing protein. (1043 aa)    
Predicted Functional Partners:
PIIN_04780
Uncharacterized protein.
 
   
  0.933
PIIN_07554
Related to rat ubiquitin ligase Nedd4.
   
 
 0.780
PIIN_06391
Uncharacterized protein.
   
 
 0.681
PIIN_04534
Probable 60S large subunit ribosomal protein L6.
    
   0.678
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.673
PIIN_04422
Probable RPL9A-ribosomal protein L9.e.
   
   0.665
PIIN_09249
Probable RPL2A-ribosomal protein L8.e.
    
   0.645
PIIN_03006
Probable ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
    
   0.640
PIIN_02459
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.639
PIIN_00840
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
    
   0.635
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.