STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05157Related to syntaxin 18. (371 aa)    
Predicted Functional Partners:
PIIN_04404
Probable SEC22-synaptobrevin (V-SNARE); Belongs to the synaptobrevin family.
    
 0.841
PIIN_04369
Uncharacterized protein.
    
  0.797
PIIN_04087
Probable Chromatin assembly factor 1 subunit c.
    
 0.719
PIIN_03186
Uncharacterized protein.
   
 0.712
PIIN_03459
Uncharacterized protein.
   
 0.712
PIIN_03768
Related to COMPASS complex protein-Laccaria bicolor.
    
 0.703
PIIN_03990
Related to COMPASS component SWD1.
    
 0.703
PIIN_06783
Related to regulator of deoxyribodipyrimidine photo-lyase PHR1.
   
 0.653
PIIN_08273
Uncharacterized protein.
   
 0.653
PIIN_03526
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.631
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.