STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05165F-box domain-containing protein. (666 aa)    
Predicted Functional Partners:
PIIN_02022
TPR_REGION domain-containing protein.
    
 0.715
PIIN_03426
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.685
PIIN_01522
Probable CHD1-transcriptional regulator.
   
 0.684
PIIN_00966
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.674
PIIN_05113
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.665
PIIN_00234
Uncharacterized protein.
    
 0.657
PIIN_00750
Probable TATA-box-binding factor TBP.
    
 0.655
PIIN_00528
Probable ARP5-Actin-related protein; Belongs to the actin family.
    
 0.653
PIIN_03398
Related to ACT1-actin; Belongs to the actin family.
    
 0.642
PIIN_04481
Related to TOA1-transcription factor TFIIA-L.
    
  0.632
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.