STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05633Related to UBP1-ubiquitin-specific protease; Belongs to the peptidase C19 family. (715 aa)    
Predicted Functional Partners:
PIIN_04624
SCA7 domain-containing protein.
    
 0.970
PIIN_00894
Related to TRA1-component of the Ada-Spt transcriptional regulatory complex (N-terminal); Belongs to the PI3/PI4-kinase family.
    
 0.968
PIIN_08691
Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.
    
 0.964
PIIN_00536
Probable TAF10-TFIID and SAGA subunit.
    
 0.964
PIIN_03447
Uncharacterized protein.
    
 0.962
PIIN_04681
Probable ubiquitin/ribosomal protein S27a fusion protein.
    
 0.959
PIIN_05020
CIA30 domain-containing protein.
    
 0.959
PIIN_06473
Uncharacterized protein.
    
 0.957
PIIN_04775
SGF29 C-terminal domain-containing protein.
   
 0.956
PIIN_03333
Related to UBI4-Ubiquitin.
    
 0.937
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.