STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05888Uncharacterized protein. (717 aa)    
Predicted Functional Partners:
PIIN_06011
Uncharacterized protein.
    
 0.710
PIIN_03950
Related to CCH1-Calcium channel (Alpha subunit).
    
 0.702
PIIN_00499
Uncharacterized protein.
    
 0.702
PIIN_03990
Related to COMPASS component SWD1.
    
 0.599
PIIN_03768
Related to COMPASS complex protein-Laccaria bicolor.
    
 0.597
PIIN_06102
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.589
PIIN_01203
Uncharacterized protein.
    
 0.587
PIIN_06723
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.581
PIIN_02125
Probable SEC13-protein transport protein; Belongs to the WD repeat SEC13 family.
    
 0.580
PIIN_05071
annotation not available
    
 0.577
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.