STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05940Related to Cutl1 or CASP protein. (675 aa)    
Predicted Functional Partners:
PIIN_07690
Related to RUD3-suppressor of uso1-1 transport defect.
    
 
 0.799
PIIN_01793
Probable GUK1-guanylate kinase.
    
 
 0.659
PIIN_01572
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.607
PIIN_06752
Uncharacterized protein.
    
   0.575
PIIN_08198
Uncharacterized protein.
    
   0.575
PIIN_03775
Related to U4/U6 small nuclear ribonucleoprotein hPrp3.
   
  
 0.559
PIIN_04452
Probable methyltransferase DPH5.
      
 0.539
PIIN_01134
Related to MRPS5-mitochondrial ribosomal protein, small subunit; Belongs to the universal ribosomal protein uS5 family.
      
 0.519
PIIN_01213
U3 small nucleolar RNA-associated protein 22.
      
 0.519
PIIN_06342
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
      
 0.506
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.