STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_05978Uncharacterized protein. (257 aa)    
Predicted Functional Partners:
PIIN_03357
Related to RPC53-47 kD subunit of DNA-directed RNA polymerase III.
   
 0.999
PIIN_00966
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.998
PIIN_00462
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
PIIN_00846
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
PIIN_01446
RPOL4c domain-containing protein.
   
 0.997
PIIN_04827
Related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit.
   
 0.997
PIIN_06230
Related to RPC25-DNA-direcred RNA polymerase III, 25 KD subunit.
   
 0.997
PIIN_07355
Probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and III.
   
 0.997
PIIN_02737
Probable 25 kD subunit of DNA-directed RNA polymerases I, II and III.
   
 0.996
PIIN_11743
Probable Rpc11-DNA-directed RNA polymerase III subunit C11.
   
 0.994
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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