STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06073Probable RAD6-E2 ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (174 aa)    
Predicted Functional Partners:
PIIN_02180
E3 ubiquitin protein ligase.
    
 0.996
PIIN_03773
Related to UVS-2 DNA repair protein UVS-2.
    
 0.992
PIIN_07085
Probable UBA1-ubiquitin-protein ligase, E1-like (Ubiquitin-activating) enzyme.
    
 0.987
PIIN_00395
Uncharacterized protein.
    
 0.986
PIIN_02459
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.965
PIIN_07554
Related to rat ubiquitin ligase Nedd4.
    
 0.947
PIIN_03333
Related to UBI4-Ubiquitin.
   
 0.939
PIIN_04265
Related to UBI4-Ubiquitin.
   
 0.939
PIIN_04681
Probable ubiquitin/ribosomal protein S27a fusion protein.
    
 0.939
PIIN_05020
CIA30 domain-containing protein.
    
 0.939
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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