PIIN_06106 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_06106

Related to DCG1 protein. (236 aa)

Predicted Functional Partners:

PIIN_01196

0.739

PIIN_03412

0.737

PIIN_08844

0.674

PIIN_01732

0.657

PIIN_07856

0.653

PIIN_11848

0.651

PIIN_00412

0.615

PIIN_03801

0.611

PIIN_00503

0.611

PIIN_00155

0.603

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00155	PIIN_00412	G4T563	G4T612	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
PIIN_00155	PIIN_01196	G4T563	G4T7S8	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
PIIN_00155	PIIN_01732	G4T563	G4U3B8	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Probable CYT1-cytochrome c1, heme protein.	0.988
PIIN_00155	PIIN_03412	G4T563	G4U2G8	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial.	0.999
PIIN_00155	PIIN_06106	G4T563	G4TLH8	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Related to DCG1 protein.	0.603
PIIN_00155	PIIN_07856	G4T563	G4TRG0	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Probable ubiquinol-cytochrome-c reductase Rieske iron-sulfur protein.	0.996
PIIN_00155	PIIN_08844	G4T563	G4TU81	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	Probable NADH dehydrogenase (Ubiquinone) 78K chain.	0.998
PIIN_00412	PIIN_00155	G4T612	G4T563	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	0.999
PIIN_00412	PIIN_01196	G4T612	G4T7S8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.997
PIIN_00412	PIIN_01732	G4T612	G4U3B8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Probable CYT1-cytochrome c1, heme protein.	0.981
PIIN_00412	PIIN_03412	G4T612	G4U2G8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial.	0.998
PIIN_00412	PIIN_06106	G4T612	G4TLH8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Related to DCG1 protein.	0.615
PIIN_00412	PIIN_07856	G4T612	G4TRG0	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Probable ubiquinol-cytochrome-c reductase Rieske iron-sulfur protein.	0.989
PIIN_00412	PIIN_08844	G4T612	G4TU81	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Probable NADH dehydrogenase (Ubiquinone) 78K chain.	0.997
PIIN_00503	PIIN_06106	G4U2T4	G4TLH8	Uncharacterized protein.	Related to DCG1 protein.	0.611
PIIN_01196	PIIN_00155	G4T7S8	G4T563	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Probable NADH2 dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	0.999
PIIN_01196	PIIN_00412	G4T7S8	G4T612	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.997
PIIN_01196	PIIN_01732	G4T7S8	G4U3B8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Probable CYT1-cytochrome c1, heme protein.	0.999
PIIN_01196	PIIN_03412	G4T7S8	G4U2G8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Probable NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial.	0.999
PIIN_01196	PIIN_06106	G4T7S8	G4TLH8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Related to DCG1 protein.	0.739