STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06465Related to translation elongation factor 2-putative. (1049 aa)    
Predicted Functional Partners:
PIIN_05159
Diphthami_syn_2 domain-containing protein.
    
 0.985
PIIN_07233
Probable Shwachman-Bodian-Diamond syndrome protein.
  
 
 0.973
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.871
PIIN_08083
Probable RPL5-60S large subunit ribosomal protein L5.e.
  
 0.869
PIIN_01618
Probable splicing factor PRP8 (U5 snRNP).
   
 0.867
PIIN_06139
Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 0.865
PIIN_00452
Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family.
  
 0.864
PIIN_01408
Probable ribosomal protein L35.
  
 0.864
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
  
 0.864
PIIN_03890
Probable pre-mRNA splicing factor prp1.
   
 0.859
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.