STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06520Rab-GAP TBC domain-containing protein. (588 aa)    
Predicted Functional Partners:
PIIN_09737
Related to YPT-1 GTP-binding protein ypt1.
    
 0.996
PIIN_10263
Related to YPT31-GTP-binding protein of the rab family.
    
 0.661
PIIN_06966
Related to GYP1-GTPase activating protein.
   
 
 0.531
PIIN_02210
Related to Myp1 protein.
    
   0.511
PIIN_00783
Probable GTPase activating protein.
   
  
 0.492
PIIN_04053
Probable MDR1-Mac1p interacting protein.
      
 0.491
PIIN_00734
Related to molybdenum cofactor biosynthetic protein.
    
 
 0.473
PIIN_01419
Related to GYP5-GTPase-activating protein (GAP).
      
 0.450
PIIN_02329
Probable YPT6-GTP-binding protein of the rab family.
    
 
 0.441
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.