STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06530G domain-containing protein. (296 aa)    
Predicted Functional Partners:
PIIN_03572
Related to LCB1-serine C-palmitoyltransferase subunit.
     
 0.791
PIIN_07037
Related to YSR3-dihydrosphingosine-1-phosphate phosphatase.
    
 0.718
PIIN_11739
Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.
   
 
 0.709
PIIN_05819
Related to SUR2-sphingosine hydroxylase; Belongs to the sterol desaturase family.
    
 0.697
PIIN_11719
Uncharacterized protein.
     
 0.687
PIIN_01142
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
     
 0.678
PIIN_11723
Uncharacterized protein.
     
 0.666
PIIN_09167
Related to LCB2-serine C-palmitoyltransferase subunit.
     
 0.664
PIIN_09910
Related to LCB2-serine C-palmitoyltransferase subunit.
     
 0.664
PIIN_00575
Related to LCB5-sphingolipid long chain base kinase.
     
 0.663
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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