STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06578t-SNARE coiled-coil homology domain-containing protein. (236 aa)    
Predicted Functional Partners:
PIIN_07899
Related to VTI1-v-SNARE: involved in Golgi retrograde protein traffic.
   
 0.999
PIIN_08455
Related to the member of the syntaxin family of t-SNAREs TLG2; Belongs to the syntaxin family.
    
 0.998
PIIN_01441
Related to syntaxin 12; Belongs to the syntaxin family.
    
 0.993
PIIN_01914
Related to YKT6-SNARE protein for Endoplasmic Reticulum-Golgi transport; Belongs to the synaptobrevin family.
    
 0.989
PIIN_02226
Probable synaptobrevin (V-SNARE) homolog.
    
 0.989
PIIN_01139
Probable SEC17-transport vesicle fusion protein.
    
 0.985
PIIN_04404
Probable SEC22-synaptobrevin (V-SNARE); Belongs to the synaptobrevin family.
    
 0.966
PIIN_08518
Probable syntaxin, vesicular transport protein.
    
 0.965
PIIN_02662
Uncharacterized protein.
    
 0.946
PIIN_03176
Probable vacuolar protein sorting protein VpsB; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.939
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.