STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_06582RNA helicase. (769 aa)    
Predicted Functional Partners:
PIIN_08452
Uncharacterized protein.
   
 0.997
PIIN_05069
Related to Streptococcus M protein.
   
 
 0.995
PIIN_00691
RNA helicase.
  
  
0.991
PIIN_01654
Related to SAS10-involved in silencing.
   
 0.988
PIIN_01649
Related to osmosensing protein SGD1.
   
 
 0.986
PIIN_01213
U3 small nucleolar RNA-associated protein 22.
   
 0.984
PIIN_00779
Related to PITSLRE protein kinase isoforms.
   
 0.981
PIIN_07600
Related to ESF2-Eighteen S rRNA processing Factor.
   
 
 0.980
PIIN_09052
Related to UTP18-Possible U3 snoRNP protein involved in maturation of pre-18S rRNA.
   
 0.980
PIIN_02398
Related to RRP5-processing of pre-ribosomal RNA.
   
 0.966
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.