STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07009Related to gibberellin 20-oxidase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (365 aa)    
Predicted Functional Partners:
PIIN_01249
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
   
 0.773
PIIN_02658
Uncharacterized protein.
    
 0.763
PIIN_02325
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
 
   
 0.630
PIIN_01621
Uncharacterized protein.
     
 0.511
PIIN_03179
annotation not available
     
 0.511
PIIN_03464
Probable LYS2-L-aminoadipate-semialdehyde dehydrogenase, large subunit.
     
 0.511
PIIN_06427
Uncharacterized protein.
     
 0.511
PIIN_00412
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
 0.488
PIIN_03293
Probable GTPase Rab7 protein.
    
 0.450
PIIN_11838
Related to AMP-binding protein.
     
 0.401
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.