STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07123Probable U1 snRNP protein. (258 aa)    
Predicted Functional Partners:
PIIN_07273
Uncharacterized protein.
   
 0.997
PIIN_06800
Related to SNP1-U1 small nuclear ribonucleoprotein.
   
 
 0.990
PIIN_04296
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 
 0.978
PIIN_00725
Related to U2 snRNP protein A.
   
 0.975
PIIN_03425
Nuclear cap-binding protein subunit 2.
    
 
 0.970
PIIN_00949
Uncharacterized protein.
    
 0.962
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.960
PIIN_08478
Related to small nuclear ribonucleoprotein associated protein b.
    
 0.953
PIIN_02198
Probable splicing factor 3B subunit 3.
    
 0.952
PIIN_03689
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.952
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.