STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07272Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis. (901 aa)    
Predicted Functional Partners:
PIIN_00160
BP28CT domain-containing protein.
   
 0.999
PIIN_01213
U3 small nucleolar RNA-associated protein 22.
  
 0.999
PIIN_03751
Uncharacterized protein.
   
 0.999
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
  
 
 0.999
PIIN_05939
Related to UTP4-U3 snoRNP protein.
   
 0.999
PIIN_06083
Related to RCL1-RNA terminal phosphate cyclase-like protein.
   
 0.999
PIIN_01654
Related to SAS10-involved in silencing.
   
 
 0.998
PIIN_02064
annotation not available
   
 
 0.998
PIIN_02398
Related to RRP5-processing of pre-ribosomal RNA.
   
 
 0.998
PIIN_03596
Related to S. pombe beta-transducin.
   
 
 0.998
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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