STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07301Related to Cullin-3; Belongs to the cullin family. (725 aa)    
Predicted Functional Partners:
PIIN_05007
Related to JHD1-JmjC domain family histone demethylase specific for H3-K36.
    
 0.997
PIIN_09173
Probable ring-box protein 1.
    
 0.981
PIIN_06168
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
   
 0.974
PIIN_06476
Probable ubiquitin-like protein ubl1.
    
 0.971
PIIN_11886
TIP120 domain-containing protein.
   
 0.970
PIIN_02257
Related to F-box/WD-repeat protein.
   
 0.968
PIIN_01998
Related to GRR1-required for glucose repression and for glucose and cation transport.
    
 0.966
PIIN_05963
Probable COP9 signalosome subunit 5 CSN5.
   
 0.963
PIIN_00768
Related to MET30-involved in regulation of sulfur assimilation genes and cell cycle progression.
    
 0.945
PIIN_07621
Probable Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.941
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.