STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07312Related to RTM1 protein. (294 aa)    
Predicted Functional Partners:
PIIN_03248
Uridine kinase; Belongs to the uridine kinase family.
    
 0.709
PIIN_07767
Probable FUR1-uracil phosphoribosyltransferase.
    
 0.709
PIIN_01722
Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.
    
 0.709
PIIN_03752
Related to 2-dehydropantoate 2-reductase.
   
 
 0.663
PIIN_08033
Related to NRK1-Nicotinamide riboside kinase.
    
 0.639
PIIN_03144
Uncharacterized protein.
     
 0.581
PIIN_11679
Uncharacterized protein.
   
 0.526
PIIN_01026
Related to GCC2 and GCC3 family protein-Laccaria bicolor.
    
 0.518
PIIN_08981
Related to stomatin.
   
 
  0.486
PIIN_05945
Related to peroxidase DyP.
    
 0.481
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.