STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07310Uncharacterized protein. (862 aa)    
Predicted Functional Partners:
PIIN_02244
Smg4_UPF3 domain-containing protein.
    
 0.875
PIIN_00021
Related to NMD2-Nonsense-mediated mRNA decay protein 2.
   
 0.850
PIIN_00022
Upf2 domain-containing protein.
   
 0.850
PIIN_06397
Related to Y14, exon junction complex.
    
 0.846
PIIN_09042
Uncharacterized protein.
    
 0.833
PIIN_05523
PINc domain-containing protein.
    
 0.819
PIIN_09912
Uncharacterized protein.
    
 0.819
PIIN_01057
Related to poly(A) binding protein II.
    
 0.810
PIIN_03909
Related to 80 kDa nuclear cap binding protein.
    
 0.766
PIIN_01170
Related to protein mediates microtubule-dependent mRNA transport.
    
 0.738
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.