STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07619Rab-GAP TBC domain-containing protein. (719 aa)    
Predicted Functional Partners:
PIIN_09737
Related to YPT-1 GTP-binding protein ypt1.
    
 0.722
PIIN_02329
Probable YPT6-GTP-binding protein of the rab family.
    
 0.698
PIIN_11748
Alginate_lyase domain-containing protein.
    
 0.654
PIIN_01864
Related to GTP-binding protein Rab5c.
    
 0.654
PIIN_02562
Probable VPS21-Rab5-like GTPase involved in vacuolar protein sorting.
    
 0.654
PIIN_08096
Probable GTP-binding protein ypt5.
    
 0.654
PIIN_00534
Related to VPS9 (Involved in vacuole trafficking).
   
  0.633
PIIN_07423
Related to GGA2-Arf-binding protein.
    
  0.618
PIIN_05388
Related to cytochrome b-type NAD(P)H oxidoreductase; Belongs to the cytochrome b5 family.
    
 0.588
PIIN_08275
Uncharacterized protein.
    
  0.558
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.