STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07710Related to UFD2-ubiquitin fusion degradation protein. (1150 aa)    
Predicted Functional Partners:
PIIN_07554
Related to rat ubiquitin ligase Nedd4.
   
 0.995
PIIN_03632
Related to RAD23-nucleotide excision repair protein (Ubiquitin-like protein).
   
 0.979
PIIN_07125
Related to UFD1-ubiquitin fusion degradation protein.
    
 
 0.973
PIIN_04051
Probable CDC48-Microsomal protein of CDC48/PAS1/SEC18 family of ATPases; Belongs to the AAA ATPase family.
   
 
 0.972
PIIN_04853
Probable NPL4-nuclear protein localization factor and ER translocation component.
    
 
 0.968
PIIN_07897
Uncharacterized protein.
   
 0.968
PIIN_03722
Related to OTU1-Yeast OTU Deubiquitinating enzyme 1.
    
 
 0.965
PIIN_06442
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.955
PIIN_09768
Related to SHP1-potential regulatory subunit for Glc7p.
    
 
 0.948
PIIN_09216
Probable Ubiquitin conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.939
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.