STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07809Uncharacterized protein. (521 aa)    
Predicted Functional Partners:
PIIN_03089
Uncharacterized protein.
    
 
 0.935
PIIN_03338
RFX-type winged-helix domain-containing protein.
    
 
 0.932
PIIN_08101
Related to RSC complex protein-Laccaria bicolor.
    
 
 0.932
PIIN_01020
ARID domain-containing protein.
    
 
 0.923
PIIN_06631
Related to SWI/SNF complex protein-Laccaria bicolor.
   
 
 0.891
PIIN_03294
Related to RSC complex protein-Laccaria bicolor.
    
 
 0.887
PIIN_04360
annotation not available
    
 
 0.885
PIIN_03310
Probable SNF2-component of SWI/SNF global transcription activator complex.
   
 
 0.883
PIIN_01774
Protein kinase domain-containing protein.
    
 0.752
PIIN_03526
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.690
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.