PIIN_07820 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_07820

Related to serine/threonine protein kinase. (646 aa)

Predicted Functional Partners:

PIIN_07911

0.942

PIIN_02953

0.936

PIIN_03562

0.900

PIIN_06306

0.857

PIIN_08496

0.857

PIIN_06722

0.830

PIIN_02202

0.819

PIIN_02879

0.806

PIIN_03556

0.803

PIIN_06810

0.803

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_02202	PIIN_02879	G4TAH5	G4TCH5	Protein kinase domain-containing protein.	AAA domain-containing protein.	0.610
PIIN_02202	PIIN_02953	G4TAH5	G4U2C2	Protein kinase domain-containing protein.	Related to serine/threonine-protein kinase Chk2.	0.960
PIIN_02202	PIIN_03556	G4TAH5	G4TE87	Protein kinase domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.409
PIIN_02202	PIIN_06306	G4TAH5	G4TM29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.429
PIIN_02202	PIIN_06722	G4TAH5	G4TN92	Protein kinase domain-containing protein.	Related to EXO1-exonuclease which interacts with Msh2p.	0.459
PIIN_02202	PIIN_06810	G4TAH5	G4TNI4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.409
PIIN_02202	PIIN_07820	G4TAH5	G4TRC4	Protein kinase domain-containing protein.	Related to serine/threonine protein kinase.	0.819
PIIN_02202	PIIN_07911	G4TAH5	G4TRL4	Protein kinase domain-containing protein.	Related to serine-protein kinase atr; Belongs to the PI3/PI4-kinase family.	0.699
PIIN_02202	PIIN_08496	G4TAH5	G4TT99	Protein kinase domain-containing protein.	Related to TSD2 protein, required for DNA replication.	0.429
PIIN_02879	PIIN_02202	G4TCH5	G4TAH5	AAA domain-containing protein.	Protein kinase domain-containing protein.	0.610
PIIN_02879	PIIN_02953	G4TCH5	G4U2C2	AAA domain-containing protein.	Related to serine/threonine-protein kinase Chk2.	0.674
PIIN_02879	PIIN_03556	G4TCH5	G4TE87	AAA domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.461
PIIN_02879	PIIN_03562	G4TCH5	G4TE91	AAA domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.999
PIIN_02879	PIIN_06306	G4TCH5	G4TM29	AAA domain-containing protein.	Uncharacterized protein.	0.875
PIIN_02879	PIIN_06722	G4TCH5	G4TN92	AAA domain-containing protein.	Related to EXO1-exonuclease which interacts with Msh2p.	0.919
PIIN_02879	PIIN_06810	G4TCH5	G4TNI4	AAA domain-containing protein.	Uncharacterized protein.	0.461
PIIN_02879	PIIN_07820	G4TCH5	G4TRC4	AAA domain-containing protein.	Related to serine/threonine protein kinase.	0.806
PIIN_02879	PIIN_07911	G4TCH5	G4TRL4	AAA domain-containing protein.	Related to serine-protein kinase atr; Belongs to the PI3/PI4-kinase family.	0.840
PIIN_02879	PIIN_08496	G4TCH5	G4TT99	AAA domain-containing protein.	Related to TSD2 protein, required for DNA replication.	0.875
PIIN_02953	PIIN_02202	G4U2C2	G4TAH5	Related to serine/threonine-protein kinase Chk2.	Protein kinase domain-containing protein.	0.960