STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_07860Probable positive effector protein GCN20. (720 aa)    
Predicted Functional Partners:
PIIN_08156
Related to translation activator GCN1.
   
 
 0.978
PIIN_01157
Probable translation initiation factor eIF-2 alpha chain.
   
 0.809
PIIN_00972
Probable mrna export factor elf1.
   
 
0.784
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.766
PIIN_06139
Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
   0.764
PIIN_08083
Probable RPL5-60S large subunit ribosomal protein L5.e.
   
 
 0.764
PIIN_03605
Related to MRP7-mitochondrial ribosomal protein, large subunit.
   
 
 0.763
PIIN_01408
Probable ribosomal protein L35.
   
 
 0.759
PIIN_02720
Probable ribosomal protein L26.
   
 
 0.755
PIIN_03329
Uncharacterized protein.
   
   0.753
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.