STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08000Related to PUF3-transcript-specific regulator of mRNA degradation. (684 aa)    
Predicted Functional Partners:
PIIN_10784
Probable CCR4-NOT transcription complex, subunit 7.
    
 
 0.810
PIIN_05426
Uncharacterized protein.
    
 
 0.710
PIIN_05744
Probable PHO81-cyclin-dependent kinase inhibitor.
    
 
 0.610
PIIN_01151
Uncharacterized protein.
   
 
 0.592
COQ5
2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial; Methyltransferase required for the conversion of 2- polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl- 6-methoxy-1,4-benzoquinol (DMQH2).
    
 
 0.585
PIIN_05729
Related to CCR4-component of the major cytoplasmic deadenylase (C-terminal).
   
 
 0.577
PIIN_03071
Prohibitin.
    
   0.571
PIIN_07535
Uncharacterized protein.
    
   0.569
PIIN_06011
Uncharacterized protein.
    
   0.568
PIIN_04129
Uncharacterized protein.
    
 
 0.561
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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