STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08100Related to RRP1-involved in processing rRNA species to mature rRNAs. (263 aa)    
Predicted Functional Partners:
PIIN_01440
Uncharacterized protein.
   
 
 0.993
PIIN_04759
Related to EBP2-required for pre-rRNA processing and ribosomal subunit assembly.
   
 
 0.993
PIIN_00885
Related to NOP15-protein involved in 60S ribosomal subunit biogenesis.
   
 
 0.992
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.992
PIIN_03613
Related to BRX1-Essential nucleolar protein required for biogenesis of the 60S ribosomal subunit.
   
 
 0.992
PIIN_00460
Protein MAK16; Belongs to the MAK16 family.
   
 
 0.991
PIIN_03115
Uncharacterized protein.
   
 
 0.991
PIIN_03135
Probable NOP2-nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.991
PIIN_11712
Related to RPF1-involved in the assembly of the large ribosomal subunit.
   
 
 0.990
PIIN_01330
Related to RLP24-Ribosomal Like Protein 24, part of a pre-60S complex.
   
 
 0.988
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.