STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08209Related to ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (500 aa)    
Predicted Functional Partners:
PIIN_02824
Probable ARG1-argininosuccinate synthetase.
  
 
 0.932
PIIN_01983
Related to aspartate semialdehyde dehydrogenase.
  
 
 0.926
PIIN_02641
Arginase; Belongs to the arginase family.
  
 
 0.919
PIIN_03137
Probable ARG4-arginosuccinate lyase.
  
 
 0.919
PIIN_07227
Related to agmatinase; Belongs to the arginase family.
  
 
 0.919
PIIN_03456
Probable HOM3-L-aspartate 4-P-transferase.
    
 0.916
PIIN_07268
Uncharacterized protein.
  
 
 0.909
PIIN_11721
Ornithine aminotransferase.
    
 0.908
PIIN_02684
Probable biotin synthase.
    
 0.907
PIIN_08764
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
   
 
 0.876
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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