STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08550PHD-type domain-containing protein. (1783 aa)    
Predicted Functional Partners:
PIIN_09071
SANT domain-containing protein.
   
 
 0.952
PIIN_07315
Uncharacterized protein.
    
 
 0.951
PIIN_11190
WD_REPEATS_REGION domain-containing protein.
    
 
 0.872
PIIN_00177
Related to SET domain-containing protein-Laccaria bicolor.
    
 0.867
PIIN_00164
Related to SET2-Histone methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
 0.856
PIIN_02481
SET domain-containing protein.
   
 0.856
PIIN_08918
Related to regulatory protein SET1.
    
 0.815
PIIN_03169
Histone H3; Belongs to the histone H3 family.
    
 0.809
PIIN_05629
Probable histone 3.
    
 0.809
PIIN_11789
Probable HHT1-histone H3.
    
 0.809
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.