STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08678Uncharacterized protein. (318 aa)    
Predicted Functional Partners:
PIIN_00395
Uncharacterized protein.
   
 0.999
PIIN_01708
Related to DNA-directed RNA polymerase II regulator.
   
 0.977
PIIN_00615
Related to RNA polymerase II-associated protein-Laccaria bicolor.
   
 0.976
PIIN_04187
Plus3 domain-containing protein.
   
 0.973
PIIN_03534
Probable SPT16-general chromatin factor (Subunit of the heterodimeric FACT complex).
   
 0.971
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
   
 0.947
PIIN_01490
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.929
PIIN_05795
Uncharacterized protein.
   
 0.929
PIIN_08492
Related to transcription elongation factor SPT6-Laccaria bicolor.
   
 0.921
PIIN_02737
Probable 25 kD subunit of DNA-directed RNA polymerases I, II and III.
   
 0.903
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.