STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08835Related to heterogeneous nuclear ribonucleoprotein. (475 aa)    
Predicted Functional Partners:
PIIN_07454
Related to pre-mrna splicing factor srp55.
    
0.931
PIIN_03909
Related to 80 kDa nuclear cap binding protein.
    
 0.786
PIIN_03425
Nuclear cap-binding protein subunit 2.
    
 0.783
PIIN_07129
Related to YRA1-RNA annealing protein.
   
 0.771
PIIN_08921
Uncharacterized protein.
    
 0.768
PIIN_00127
Probable translation initiation factor eIF2 gamma chain.
   
 0.734
PIIN_00432
Related to small nuclear ribonucleoprotein snRNP U1A.
    
 0.733
PIIN_05257
Related to small nuclear ribonucleoprotein U2B` (U2 small nuclear RNA-associated protein B`).
    
 0.733
PIIN_09707
Probable translation initiation factor eIF-4A, exon junction complex; Belongs to the DEAD box helicase family.
   
 0.725
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.722
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.