STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_08921Uncharacterized protein. (1128 aa)    
Predicted Functional Partners:
PIIN_03425
Nuclear cap-binding protein subunit 2.
    
 0.931
PIIN_07273
Uncharacterized protein.
   
 
 0.908
PIIN_01057
Related to poly(A) binding protein II.
   
 0.902
PIIN_00882
Related to mRNA export factor mex67.
   
 0.901
PIIN_00332
Related to CEF1-required during G2/M transition.
   
 
 0.900
PIIN_03909
Related to 80 kDa nuclear cap binding protein.
   
 0.899
PIIN_03689
Small nuclear ribonucleoprotein Sm D2.
   
 0.896
PIIN_00912
Probable dis1-suppressing protein kinase dsk1.
    
 0.891
PIIN_02523
Small nuclear ribonucleoprotein Sm D3.
   
 0.891
PIIN_07007
Probable dis1-suppressing protein kinase dsk1.
    
 0.891
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.