STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09298Uncharacterized protein. (300 aa)    
Predicted Functional Partners:
PIIN_02029
Related to non-snRNP spliceosome component (Pre-mRNA splicing protein PRP19).
    
   0.950
PIIN_01813
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
    
   0.946
PIIN_00332
Related to CEF1-required during G2/M transition.
    
   0.944
PIIN_04882
Related to CWC2-involved in mRNA splicing.
    
 
 0.944
PIIN_08095
Probable ribosomal elongation factor EF-2.
    
   0.944
PIIN_01049
Uncharacterized protein.
    
   0.826
PIIN_07412
Uncharacterized protein.
    
   0.826
PIIN_03248
Uridine kinase; Belongs to the uridine kinase family.
   
   0.613
PIIN_07767
Probable FUR1-uracil phosphoribosyltransferase.
   
   0.613
PIIN_01722
Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.
    
   0.604
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.