STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09705RRM domain-containing protein. (91 aa)    
Predicted Functional Partners:
PIIN_01909
Probable Splicing factor 3b, subunit 2.
    
 0.999
PIIN_02198
Probable splicing factor 3B subunit 3.
    
 0.999
PIIN_05306
Probable splicing factor 3b subunit 1.
   
 0.999
PIIN_01227
Probable Splicing factor 3B subunit 5.
   
 0.998
PIIN_03446
Related to spliceosome-associated protein SAP-49.
    
 0.998
PIIN_08404
Probable pre-mRNA splicing factor.
   
 0.997
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.990
PIIN_02395
Related to PRP11-pre-mRNA splicing factor.
   
 0.989
PIIN_01763
Uncharacterized protein.
   
  0.982
PIIN_09708
Related to RNA splicing factor PRP9.
   
 0.977
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (20%) [HD]