STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09707Probable translation initiation factor eIF-4A, exon junction complex; Belongs to the DEAD box helicase family. (397 aa)    
Predicted Functional Partners:
PIIN_06397
Related to Y14, exon junction complex.
   
 0.998
PIIN_03817
Probable mago nashi protein, exon junction complex.
   
 0.997
PIIN_07565
Probable Pre-mRNA splicing factor cwc22.
    
 0.996
PIIN_06011
Uncharacterized protein.
   
 0.985
PIIN_02244
Smg4_UPF3 domain-containing protein.
   
 0.983
PIIN_00736
Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.
   
 0.979
PIIN_01057
Related to poly(A) binding protein II.
   
 0.979
PIIN_09425
Probable ATP dependent RNA helicase.
   
 0.979
PIIN_01649
Related to osmosensing protein SGD1.
   
 
 0.970
PIIN_01618
Probable splicing factor PRP8 (U5 snRNP).
   
 0.968
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.