STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09708Related to RNA splicing factor PRP9. (518 aa)    
Predicted Functional Partners:
PIIN_00725
Related to U2 snRNP protein A.
   
 0.998
PIIN_02395
Related to PRP11-pre-mRNA splicing factor.
    
 0.997
PIIN_01909
Probable Splicing factor 3b, subunit 2.
   
 0.996
PIIN_02198
Probable splicing factor 3B subunit 3.
   
 0.996
PIIN_04296
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.995
PIIN_04544
Related to RNA helicase.
   
 0.995
PIIN_03446
Related to spliceosome-associated protein SAP-49.
    
 0.995
PIIN_01227
Probable Splicing factor 3B subunit 5.
   
 0.992
PIIN_05306
Probable splicing factor 3b subunit 1.
   
 0.992
PIIN_00332
Related to CEF1-required during G2/M transition.
   
 
 0.989
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.