STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09799Related to RIO Kinase 1. (678 aa)    
Predicted Functional Partners:
PIIN_04186
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.999
PIIN_03638
Probable 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.997
PIIN_01838
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.994
PIIN_08861
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.993
PIIN_01771
Probable 40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.992
PIIN_02602
Related to LTV1-low-temperature viability protein.
   
 0.991
PIIN_02714
Probable PNO1 protein.
   
 0.980
PIIN_07288
Probable casein kinase-1 hhp1; Belongs to the protein kinase superfamily.
    
 0.978
PIIN_06139
Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.973
PIIN_00452
Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family.
    
 0.965
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.