STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_09982Beta-xylanase. (269 aa)    
Predicted Functional Partners:
PIIN_04707
Probable alpha-L-arabinofuranosidase.
 
    
 0.722
PIIN_04708
Probable alpha-L-arabinofuranosidase.
 
    
 0.644
PIIN_02775
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.574
PIIN_04948
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.574
PIIN_04706
Probable alpha-L-arabinofuranosidase.
 
    
 0.547
PIIN_09355
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.518
PIIN_02619
Probable DNA-directed RNA polymerase II chain Rpb7.
    
  0.513
PIIN_02737
Probable 25 kD subunit of DNA-directed RNA polymerases I, II and III.
    
  0.513
PIIN_04796
Uncharacterized protein.
    
  0.513
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
    
  0.483
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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