STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_10226Related to Nucleolar protein NOP4. (850 aa)    
Predicted Functional Partners:
PIIN_00885
Related to NOP15-protein involved in 60S ribosomal subunit biogenesis.
   
 
 0.989
PIIN_03066
Related to DRS1-RNA helicase of the DEAD box family; Belongs to the DEAD box helicase family.
   
 
 0.984
PIIN_02980
Related to MAK21-protein required for 60S ribosomal subunit biogenesis.
   
 
 0.984
PIIN_03135
Probable NOP2-nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.982
PIIN_01226
PUM-HD domain-containing protein.
   
 
 0.981
PIIN_04907
RRM domain-containing protein.
   
 
 0.979
PIIN_01705
Related to MAK5-ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 
 0.978
PIIN_03224
Related to NOC2-Crucial for intranuclear movement of ribosomal particles.
   
 
 0.978
PIIN_01032
Related to SSF1-nucleolar protein involved in the assembly of the large ribosomal subunit.
   
   0.975
PIIN_07179
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.974
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.