STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_10304Related to RRP12-required for normal pre-rRNA processing. (954 aa)    
Predicted Functional Partners:
PIIN_00972
Probable mrna export factor elf1.
   
  
 0.963
PIIN_05653
Probable periodic tryptophan protein PWP2.
   
 
 0.944
PIIN_05178
Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis.
   
 
 0.924
PIIN_01163
Related to NOC4-ribosome biogenesis protein.
   
 
 0.914
PIIN_11426
Uncharacterized protein.
 
      0.900
PIIN_05180
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.881
PIIN_05181
Probable NOP58-required for pre-18S rRNA processing.
   
 
 0.878
PIIN_08452
Uncharacterized protein.
   
 
 0.859
PIIN_02980
Related to MAK21-protein required for 60S ribosomal subunit biogenesis.
   
 
 0.857
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.856
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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