STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_10412Integrase catalytic domain-containing protein. (804 aa)    
Predicted Functional Partners:
PIIN_04103
Related to probable RNA helicase MPH1.
    
 0.942
PIIN_04087
Probable Chromatin assembly factor 1 subunit c.
    
 0.687
PIIN_10301
Uncharacterized protein.
 
     0.640
PIIN_08830
Related to RFA2-DNA replication factor A, 36 kDa subunit.
   
 0.638
PIIN_05449
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.585
PIIN_10750
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.580
PIIN_06447
Uncharacterized protein.
 
     0.572
PIIN_09876
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.568
PIIN_10422
Uncharacterized protein.
 
     0.554
PIIN_11126
Reverse transcriptase Ty1/copia-type domain-containing protein.
 
     0.547
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.