STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_10778Reverse transcriptase domain-containing protein. (529 aa)    
Predicted Functional Partners:
PIIN_04103
Related to probable RNA helicase MPH1.
    
 0.942
PIIN_10501
RNase H domain-containing protein.
 
     0.664
PIIN_04087
Probable Chromatin assembly factor 1 subunit c.
    
 0.601
PIIN_08813
Endo/exonuclease/phosphatase domain-containing protein.
 
     0.565
PIIN_11113
RNase H domain-containing protein.
 
     0.558
PIIN_04853
Probable NPL4-nuclear protein localization factor and ER translocation component.
    
  0.534
PIIN_11158
RNase H domain-containing protein.
 
     0.528
PIIN_04755
Uncharacterized protein.
    
  0.526
PIIN_08830
Related to RFA2-DNA replication factor A, 36 kDa subunit.
    
  0.526
PIIN_02985
Uncharacterized protein.
    
  0.526
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.