STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_11060UBA domain-containing protein. (90 aa)    
Predicted Functional Partners:
PIIN_04147
Related to cell cycle arrest protein BUB2.
    
 
 0.895
PIIN_03632
Related to RAD23-nucleotide excision repair protein (Ubiquitin-like protein).
   
 
 0.839
PIIN_03333
Related to UBI4-Ubiquitin.
   
 
 0.790
PIIN_04265
Related to UBI4-Ubiquitin.
   
 
 0.790
PIIN_07364
Probable RPN11-26S proteasome regulatory subunit.
   
 
 0.730
PIIN_07897
Uncharacterized protein.
   
 
 0.711
PIIN_07134
Ubiquitin-like domain-containing protein.
   
 
 0.698
PIIN_04681
Probable ubiquitin/ribosomal protein S27a fusion protein.
   
 
 0.691
PIIN_05020
CIA30 domain-containing protein.
   
 
 0.691
PIIN_03140
AN1-type domain-containing protein.
   
 
 0.674
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.